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Genetic characteristics of Tomato brown rugose fruit virus (ToBRFV) isolates in the Russian Federation and neighboring countries

https://doi.org/10.69536/FKR.2025.68.86.001

Abstract

Tomato brown rugose fruit virus or Tobamovirus fructirugosum (ToBRFV) is a quarantine pest of the EAEU, EPPO and some other countries. The virus affects tomatoes, peppers and several weed species. Yield losses of tomato fruits as a result of infection with ToBRFV can reach 70%. Due to the development of intensive necrosis and deformation, the fruits of infected plants become unmarketable.

ToBRFV is characterized by a variety of pathways and is capable of remaining for a long time in plant residues, soil, water, hydroponic solutions and on various inert surfaces. Seed infection is of great importance in the spread of ToBRFV.

According to the national report, ToBRFV was first detected in the Russian Federation in 2023, which accounted for 5 quarantine phytosanitary areas in 4 constituent entities of the Russian Federation. In 2024, a further expansion of its area was observed.

The most important prerequisite for preventing the spread of phytopathogenic viruses is the identification of their infection sources, which can be achieved by comparing the nucleotide sequence of the identified isolates and isolates of a given pathogen of different geographic origins.

This article presents the results of a study of the genetic characteristics of the ToBRFV isolates identified in Stavropol Krai, Volgograd Oblast and Moscow Oblast, the Republic of Kazakhstan and the Republic of Uzbekistan.

About the Authors

E. N. Lozovaya
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Evgeniya Lozovaya, Researcher, Postgraduate Department

Bykovo, Ramenskoye, Moscow Oblast, 140150



T. S. Zhivaeva
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Tatiana Zhivaeva, Researcher, Research and Methodology Department of Virology

Bykovo, Ramenskoye, Moscow Oblast, 140150



Yu. N. Prikhodko
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Yuri Prikhodko, PhD in Agriculture, Leading Researcher, Research and Methodology Department of Virology

Bykovo, Ramenskoye, Moscow Oblast, 140150



Yu. A. Shneyder
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Yuri Shneyder, PhD in Biology, Leading Researcher, Head of Research and Methodology Department of Virology,

Bykovo, Ramenskoye, Moscow Oblast, 140150



I. G. Bashkirova
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Ida Bashkirova, PhD in Biology, Researcher, Research and  Methodology Department of Virology

Bykovo, Ramenskoye, Moscow Oblast, 140150



E. V. Karimova
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Elena Karimova, PhD in Biology, Senior Researcher, Head of Research and Methodology Department of Virology and Bacteriology

Bykovo, Ramenskoye, Moscow Oblast, 140150



References

1. Karimova E.V., Shneyder Y.A. Tomato brown rugose fruit virus is a potential threat for the tomato and pepper industry. Plant Health and Quarantine. 2020a;(3):6-16. https://doi.org/10.69536/FKR.2020.97.40.001

2. Karimova E.V., Shneyder Y.A. Tomato brown rugose fruit virus is a potential pathogen for the Russian Federation and other EAEU countries. Plant Health and Quarantine. 2020b; (9): 38–41.

3. Lozovaya E.N., Prikhodko Yu.N., Zhivaeva T.S., Shneyder Yu.A., Karimova E.V. Diagnosis of Tobamovirus genus viruses infecting Solanaceae. Plant Health and Quarantine. 2022;(2):39-49. https://doi.org/10.69536/p4517-2518-6750-w.

4. ISPM 32, International Standards for Phytosanitary Measures No. 32 “Categorization of Commodities According to Pest Risk”, 2009, 19 p.

5. Тhe National Report on Quarantine and Phytosanitary Status of the Territory of the Russian Federation in 2023. Plant Health and Quarantine. 2024; (2):2-16.

6. Тhe National Report on Quarantine and Phytosanitary Status of the Territory of the Russian Federation in 2023. Plant Health and Quarantine. 2025;(2). (in press).

7. Shneyder Yu.A., Karimova E.V., Prikhodko Yu.N., Lozovaya E.N., Zhivaeva T.S. Tomato viruses especially dangerous for vegetable growing of Russia. Potato and vegetables. 2021; (6): 3–8. (In Russ.)

8. Alkowni R., Alabdallah O., Fadda Z. Molecular identification of Tomato brown rugose fruit virus in tomato in Palestine// Journal of Plant Pathology. 2019. Vol. 101(3). P.719-723. DOI:10.1007/s42161-019-00240-7.

9. Davino S., Caruso A.G., Bertacca S., Barone S., Panno S. Tomato brown rugose fruit virus: seed transmission rate and efficacy of different seed disinfection treatments// Plants. 2020. 9(11):1615. https://doi.org/10.3390/plants9111615.

10. Dovas C.I., Efthimiou K., Katis N.I. Generic detection and differentiation of tobamoviruses by a spot nested RT-PCR-RFLP using dI-containing primers along with homologous dG-containing primers// Journal of Virological Methods. 2004. Vol.117. P.137–144. DOI: 10.1016/j.jviromet.2004.01.004.

11. EPPO, 2022. PM 7/146(2) Tomato brown rugose fruit virus/ EPPO Standard on Diagnostics// EPPO Bulletin. 2022. Vol. 52. P. 665–692.

12. EPPO, 2025. Tobamovirus fructirugosum. EPPO datasheets on pests recommended for regulation. https://gd.eppo.int (accessed 2025-01-28).

13. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41:95-98.

14. Levitzky N., Smith E., Lachman O., Luria N., Mizrahi Y., Bakelman H., Sela N., Laskar O., Milrot E., Dombrovsky A. The bumblebee Bombus terrestris carries a primary inoculum of Tomato brown rugose fruit virus contributing to disease spread in tomatoes// PLoS ONE. 2019. Vol. 14(1): e0210871. https://doi.org/10.1371/journal.pone.0210871.

15. Luria N., Smith E., Reingold V., Bekelman I., Lapidot M. A new Israeli Tobamovirus isolate infects tomato plants harboring Tm-22 resistance genes// PLOS ONE. 2017. 12(1): e0170429. https://doi.org/10.1371/journal.pone.0170429.

16. Panno S., Caruso A.G., Barone S., Lo Bosco G., Rangel E.A., Davino S. Spread of Tomato brown rugose fruit virus in Sicily and evaluation of the spatiotemporal dispersion in experimental conditions// Agronomy. 2020. 10(6):834. https://doi.org/10.3390/ agronomy10060834.

17. Salem N., Mansour A., Ciuffo M., Falk B.W., Turina M. A new tobamovirus infecting tomato crops in Jordan// Archives of Virology. 2016. Vol.161 (2). P. 503–506. DOI: 10.1007/s00705-015-2677-7.

18. Salem N.M., Jewehan A., Aranda M.A., Fox A. Tomato Brown Rugose Fruit Virus Pandemic// Annu. Rev. Phytopathol. 2023. Vol.61. P.137-164. https://doi.org/10.1146/annurev-phyto-021622-120703.

19. Salem N.M., Sulaiman A., Samarah N., Turina M., Vallino M. Localization and mechanical transmission of Tomato brown rugose fruit virus in tomato seeds// Plant Disease. 2022. Vol.106 (1). P. 275-281. https://doi.org/10.1094/PDIS-11-20-2413-RE.

20. Shneyder Y., Karimova E., Zhivaeva T., Lozovaya E., Bashkirova I., Prikhodko Y. Comparison of express-diagnostic kit and PCR tests for detection of Tomato brown rugose fruit virus Acta Horticulturae. 2022. Т. 1351. С. 113–118.

21. Tamura K., Stecher G., and Kumar S. (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution 38:3022-3027.

22. https://fsvps.gov.ru/files/otkrytye-dannyeperechen-karantinnyh-fitosanitarnyh-zon-skachatnabor-v-csv-i-v-xlsx/ (last accessed: 09.01.2025 г.)

23. https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC=GlobalAln (last accessed: 10.01.2025 г.)

24. https://ncbiinsights.ncbi.nlm.nih.gov/2021/07/09/blast-2-12-0/ (last accessed: 15.01.2025 г.).


Review

For citations:


Lozovaya E.N., Zhivaeva T.S., Prikhodko Yu.N., Shneyder Yu.A., Bashkirova I.G., Karimova E.V. Genetic characteristics of Tomato brown rugose fruit virus (ToBRFV) isolates in the Russian Federation and neighboring countries. Plant Health and Quarantine. 2025;(1):2-14. (In Russ.) https://doi.org/10.69536/FKR.2025.68.86.001

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