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Diagnosis of Tobamovirus genus viruses infecting Solanaceae

https://doi.org/10.69536/p4517-2518-6750-w

Abstract

Tomato mosaic virus (ToMV), Tobacco mosaic virus (TMV), Tomato brown rugose fruit virus (ToBRFV), Pepper mild mottle virus (PMMoV), Tobacco mild green mosaic virus (TMGMV) are serious pests of Solanaceae in open and protected ground. Yield losses of tomato and pepper as a result of infection with these pathogens can reach 100%. Early detection of infected seed lots and outbreaks of these viruses is essential to prevent their rapid spread. In the course of the research, the specificity of seven test systems for enzyme immunoassay (ELISA) to TMV, ToMV, TMGMV and PMMoV of  leading manufacturers was evaluated. The polymerase chain reaction (PCR) was tested with 21 pairs of universal and species-specific primers. Primers have been identified that allow universal detection of the tobamovirus complex on Solanaceae crops. Two methods of multiplex PCR were tested to detect and identify several viruses simultaneously. The primers were screened for their specificity for TMV, ToMV, TMGMV and PMMoV. Proprietary primers with high specificity for TMV and ToMV were developed.

About the Authors

E. N. Lozovaya
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Evgenia Lozovaya, Researcher of Post-Graduate Studies Department

Bykovo, Ramenskoye, Moscow Oblast



Yu. N. Prikhodko
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Yuri Prikhodko, PhD in Agriculture, Leading Researcher, Research and Methodology Department of Virology and Bacteriology

Bykovo, Ramenskoye, Moscow Oblast



T. S. Zhivaeva
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Tatiana Zhivaeva, Researcher, Research and Methodology Department of Virology and Bacteriology

Bykovo, Ramenskoye, Moscow Oblast



Yu. A. Shneyder
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Yuri Shneyder, PhD in Biology, Head of Research and Methodology and Experimental Center, Leading Researcher

Bykovo, Ramenskoye, Moscow Oblast



E. V. Karimova
FGBU “All-Russian Plant Quarantine Center” (FGBU “VNIIKR”)
Russian Federation

Elena Karimova, PhD in Biology, Senior Researcher, Head of Research and Methodology Department of Virology and Bacteriology

Bykovo, Ramenskoye, Moscow Oblast



References

1. Chang N.H.T.K. Distribution and pathogenesis of viral diseases of tomato in the conditions of Vietnam and Russia: Ph.D. diss. … cand. biol. Sciences. M., 2013; 22 p.

2. Adams M., Heinze C., Jackson A., Kreuze J., Macfarlane S., Torrance L. Genus Tobamovirus. In: King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. (ed). Virus taxonomy: classification and nomenclature of viruses. Ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, London, United Kingdom, 2012: 1153–1156.

3. Alishiri A., Rakhshandehroo F., Zamanizadeh H.-R., & Palukaitis P. Prevalence of Tobacco mosaic virus in Iran and evolutionary analyses of the coat protein gene. The Plant Pathology Journal, 2013; 29 (3): 260–273. URL: https://doi.org/10.5423/PPJ.OA.09.2012.0145.

4. Broadbent L., Fletcher J.T. The epidemiology of tomato mosaic: IV. Persistence of virus on clothing and glasshouse structures. Annals of Applied Biology, 1963; 52: 233–241.

5. Castello J., Lakshman D., Tavantzis S., Rogers S., Bachand G., Jagels R., Carlisle J., Liu Y. Detection of infectious Tomato mosaic tobamovirus in fog and clouds. Ecology and Epidemiology, 1995; 85 (11): 1409–1412.

6. Castello J., Rogers S., Starmer W., Catranis C., Ma L., Bachand G., Zhao Y., Smith J. Detection of Tomato mosaic tobamovirus RNA in ancient glacial ice. Polar Biology, 1999; 22: 207–212. URL: https://doi.org/10.1007/s003000050411.

7. Chen S., Gu H., Wang X., Chen J., Zhu W. Multiplex RT-PCR detection of Cucumber mosaic virus subgroups and Tobamoviruses infecting Tomato using 18S rRNA as an internal control. Acta Biochim. Biophys. Sin., 2011; 43: 465–471.

8. Dovas C., Efthimiou K., Katis N. Generic detection and differentiation of tobamoviruses by a spot nested RT-PCR-RFLP using dI-containing primers along with homologous dG-containing primers. J. Virol. Methods, 2004; 117: 137–144.

9. Gumus M., Paylan I. Detection of viruses in seeds of some vegetables by reverse transcriptase polymerase chain reaction (RT-PCR). African Journal of Biotechnology, 2013; 12 (25): 3891–3897.

10. Hančinský R., Mihálik D., Mrkvová M., Candresse T., Glasa M. Plant viruses infecting Solanaceae family members in the cultivated and wild environments: a review. Plants, 2020; 9 (5): 667. URL: https://doi.org/10.3390/plants9050667.

11. Haramoto E., Kitajima M., Kishida N., Konno Y., Katayama H., Asami M., Akiba M. Occurrence of Pepper Mild Mottle Virus in Drinking Water Sources in Japan. Applied and Environmental Microbiology, 2013; 79 (23): 7413–7418.

12. Kegler H., Fuchs E., Knapp H.D., Ehrig F. Untersuchungen zum vorkommen pflanzenpathogener Viren im Naturschutzgebiet Insel Vilm (Biosphärenreservat Südost-Rügen). Arch Phytopathol Plant Protect, 1994; 29: 211–216.

13. Kim J., Choi G., Kim J., Lee S., Choi J., Ryu K. Development of single-tube multiplex immunocapture RT-PCR assay for simultaneous detection of two pepper tobamoviruses. Plant Pathol. J., 2006; 22: 164–167.

14. Kumar S., Shankar A., Nayaka S., Lund O., Prakash H. Detection of Tobacco mosaic virus and Tomato mosaic virus in pepper and tomato by multiplex RT-PCR. Letters in Applied Microbiology, 2011; 53 (3): 359–363.

15. Letschert B., Adam G., Lesemann D., Willingmann P., Heinze C. Detection and differentiation of serologically cross-reacting tobamoviruses of economical importance by RT-PCR and RT-PCR-RFLP. J. Virol. Methods, 2002; 106: 1–10. URL: https://doi.org/10.1016/s0166-0934(02)00135-0.

16. Levitzky N., Smith E., Lachman O., Luria N., Mizrahi Y. et al., The bumblebee Bombus terrestris carries a primary inoculum of Tomato brown rugose fruit virus contributing to disease spread in tomatoes. PLOS ONE, 2019; 14 (1): e0210871. URL: https://doi.org/10.1371/journal.pone.0210871.

17. Li Y., Wang C., Xiang D., Li R., Liu Y., Li F. First Report of Tomato mottle mosaic virus infection of pepper in China. Plant Disease, 2014; 98 (10): 1447.

18. Li Y., Wang Y., Hu J., Xiao L., Tan G., Lan P., Liu Y., Li F. The complete genome sequence, occurrence and host range of Tomato mottle mosaic virus Chinese isolate. Virology Journal, 2017; 14: 15: 1–9. URL: https://doi.org/10.1186/s12985-016-0676-2.

19. Lucas G. Diseases of tobacco, 3rd Edition. Raleigh, North Carolina, USA: Biological Consulting Associates, 1975; 621 p.

20. Menzel W., Knierim D., Winter S., Hamacher J., Heupel M. First report of Tomato brown rugose fruit virus infecting tomato in Germany. New Disease Reports, 2019; 39: 1. URL: https://doi.org/10.5197/j.2044-0588.2019.039.001.

21. Reingold V., Lachman O., Belausov E., Koren A., Mor N., Dombrovsky A. Epidemiological study of Cucumber green mottle mosaic virus in greenhouses enables reduction of disease damage in cucurbit production. Annals of Applied Biology, 2016; 168: 29–40.

22. Sharma P., Verma R., Mishra R., Sahu A., Choudhary D., Gaur R. First report of Cucumber green mottle mosaic virus association with the leaf green mosaic disease of a vegetable crop, Luffa acutangula L. Acta virologica, 2014; 58: 299–300. URL: https://doi.org/10.4149/av_2014_03_299.

23. Smith E., Dombrovsky, A. Aspects in Tobamovirus Management in Intensive Agriculture. In: (Ed.), Plant Diseases – Current Threats and Management Trends. IntechOpen, 2019. URL: https://doi.org/10.5772/intechopen.87101.

24. Yan Z., Zhao M., Ma H., Liu L., Yang G., Geng C., Tian Y., Li X. Biological and molecular characterization of Tomato brown rugose fruit virus and development of quadruplex RT-PCR detection. Journal of Integrative Agriculture, 2021; 20 (7): 1871–1879.

25. Yang J., Wang F., Chen D., Shen L., Qian Y., Liang Z., Zhou W., Ya T. Development of a one-step immunocapture Real-time RT-PCR assay for detection of Tobacco mosaic virus in soil. Sensors (Basel, Switzerland), 2021; 12: 16685–16694. URL: https://doi.org/10.3390/s121216685.

26. Zhu P.-X., Zhang Q.-P., Ji Z.-L, Zhu F. First report of Tobacco mosaic virus infecting Lagenaria siceraria (Molina) Standl. var. clavata Makino in China. Journal of Plant Pathology, 2020; 102: 1293. URL: https://doi.org/10.1007/s42161-020-00574-7.


Review

For citations:


Lozovaya E.N., Prikhodko Yu.N., Zhivaeva T.S., Shneyder Yu.A., Karimova E.V. Diagnosis of Tobamovirus genus viruses infecting Solanaceae. Plant Health and Quarantine. 2022;(2):39-49. https://doi.org/10.69536/p4517-2518-6750-w

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